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Standardized phylogenetic and molecular evolutionary analysis applied to species across the microbial tree of life. - Abstract - Europe PMC
The Northern Arizona SNP Pipeline (NASP): accurate, flexible, and rapid identification of SNPs in WGS datasets
Criteria for calling a SNP in each of the four algorithms
Figure 2 from The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.
PDF] The Genome Analysis Toolkit: a MapReduce framework for analyzing next- generation DNA sequencing data.
PDF) Emergent biomarker derived from next-generation sequencing to identify pain patients requiring uncommonly high opioid doses
NGSgo-MX6-1
Number of SNVs called by GATK-UGT with different cutoffs of genotype